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Restriction introduction
Reaction activity and Conditions for Restriction Endonucleases
HELINI Restriction Enzymes
Reaction Buffer Sets activity and Conditions for Restriction Endonucleases
Restriction Introductions
 

Quality Guarantee:
HELINI Restriction endonucleases are of consistent quality as they pass the standard quality control assays (Non-specific nuclease and Cross-contamination assay, Blue/White Cloning assay) and in addition the Labelled Oligonucleotide) test to guarantee that they are free from trace amounts of endo & exo-deoxyribonucleases and phosphatase.

Activity Assay:
One unit of Restriction enzyme is the amount required to hydrolyze 1µg of DNA in 60 minutes in a total reaction volume of 50µl. Concentrated enzymes are first diluted to approximately 500-1000units/ml with enzyme dilution buffer before determination of activity. Reactions have been optimized at 37ºC using lambda phage DNA as a substrate.

Storage and Shipping:
All restriction endonucleases must be stored at -20ºC. During shipment in dry ice, enzyme may freeze. This does not affect their quality, since all our enzymes retain their activity after three freeze thaw cycles. Short time exposure to +4ºC does not affect enzymes quality.

Concentration:
Most of restriction enzymes are supplied at a user friendly concentration of 10u/µl.

A typical Restriction Digest
Most researchers follow the general rule that 10units of restriction endonucleases is sufficient to overcome variability in DNA source, quantity and purity. Generally, 1µl of enzyme is added to 1µg of purified DNA in a final volume of 50µl of the appropriate 1X Buffer followed by incubation for 1 hour at the recommended temperature. If an excess of enzyme is used, the length of incubation can often be decreased to save time. Alternatively you can productively digest with fewer units of enzyme for up to 16 hours with many restriction enzymes.

 

Setting up a Restriction Endonuclease reaction

Enzyme:
Restriction enzymes should be kept on ice when they are not in the freezer. The enzyme should always be the last component added to a reaction.

DNA
The preparation of DNA to be cleaved should be free of contaminants such as phenol, chloroform, alcohol, EDTA, detergents, or excessive salts, all of which can interfere with restriction enzyme activity. DNA methylation is also an important element of a restriction ndigest.

Restriction Buffer
We provide a 10X restriction buffers with each restriction enzyme to ensure optimal (100%) activity. The buffer should be used at 1X concentration in the reaction.

Reaction Volume:
By definition, 1µl of restriction enzyme will completely digest 1µg of substrate DNA in a 50µl reaction in 60 minutes. This enzyme - DNA - Reaction volume ratio can be used as guide when designing reactions.

Mixing:
The reaction must be thoroughly mixed to achieve complete digestion. We recommend gently pipetting the reaction mixture up and down or flicking the reaction tube. Follow with a quich spin-down in a microcentrifuge. Do not vortex the reaction.

Incubation Temperature:
The recommended incubation temperature for most restriction enzymes is 37ºC. Restriction enzymes isolated from thermophilic bacteria require higher incubation temperatures ranging from 50ºC to 65ºC. Please refer instruction manual and certificate of analysis' for appropriate incubation temperature.

 

 

Reaction activity and Conditions for Restriction Endonucleases

 

    Enzyme activity in %  

Enzyme

Recommended Buffer

Thermal Inactivation in 20min

Buffer A Buffer B Buffer C Buffer D Buffer E
AluI E 65ºC 50-100 0-20 0-20 0-20 100
ApaLI E 65ºC 50-100 100 0-20 50-100 100
ApaI A 65ºC 100 20-50 0-20 0-20 20-50
AvaI E 65ºC 100 50-100 0-20 0-20 100
BamHI BamHI 80ºC 20-50 100 20-50 50-100 100
BcII B 80ºC 20-50 100 20-50 20-50 100
BstEII C 65ºC 20-50 20-50 100 50-100 50-100
BgII C 65ºC 0-20 50-100 100 100 0-20
BgIII C No 0-20 20-50 100 50-100 0-20
ClaI E 65ºC 20-50 20-50 20-50 20-50 100
DraI E 65ºC 50-100 50-100 20-50 20-50 100
EcoRV D 65ºC 0-20 50-100 50-100 100 20-50
EcoRI EcoRI 65ºC 0-20 NR 100 100 NR
HaeIII C 80ºC 20-50 20-50 50-100 100 50-100
HhaI E 65ºC 50-100 50-100 20-50 20-50 100
HincII E 65ºC 50-100 50-100 20-50 50-100 100
HindIII D 65ºC 0-20 20-50 0-20 100 50-100
HinfI D 65ºC 0-20 20-50 50-100 100 50-100
HpaII E 65ºC 50-100 50-100 0-20 20-50 100
KpnI KpnI 80ºC 20-50 0-20 0-20 0-20 20-50
MboI D 65ºC 50-100 50-100 50-100 100 50-100
MluI D 65ºC 0-20 20-50 50-100 100 20-50
MspI E 65ºC 50-100 50-100 0-20 0-20 100
NaeI E 65ºC 50-100 20-50 0-20 0-20 100
NcoI E 65ºC 20-50 20-50 20-50 50-100 100
NheI E 65ºC 100 20-50 0-20 0-20 100
NotI C 65ºC 0-20 0-20 100 20-50 0-20
PstI C 80 ºC 50-100 50-100 100 100 50-100
SacI SacI 65ºC 0-20 0-20 0-20 0-20 0-20
SaII E 65ºC 0-20 0-20 100 20-50 0-20
SmaI C 65ºC 50-100 0-20 0-20 0-20 100
SspI B 65ºC 20-50 100 0-20 50-100 100
TaqI TaqI No 0-20 20-50 20-50 20-50 20-50
XbaI E 65ºC 50-100 50-100 20-50 0-20 100
XhoI D 80 ºC 0-20 50-100 50-100 100 20-50
XmnI E 65ºC 20-50 50-100 0-20 0-20 100

 

 
Restriction Enzymes
 

 

Cat. No

Enzyme

Specificity 5'    3'

Buffer
Incubation
Units

Price(Rs.)

3035
AluI
AGCT
E
37ºC
100U
1950
3036
AluI
AG↓CT
E
37ºC
500U
5250
3037
ApaLI
GTGCAC
E
37ºC
200U
1800
3038
ApaLI
GTGCAC
E
37ºC
600U
3600
3039
ApaI
GGGCCC
A
37ºC
500U
1300
3040
ApaI
GGGCCC
A
37ºC
1000U
2000
3041
AvaI
CYCGRG
E
37ºC
200U
2100
3042
AvaI
CYCGRG
E
37ºC
1000U
4600
3043
BamHI
GGATCC
BamHI
37ºC
2000U
1900
3044
BamHI
GGATCC
BamHI
37ºC
4000U
2900
3045
BcII
TGATCA
B
55ºC
200U
1500
3046
BcII
TGATCA
B
55ºC
1000U
3400
3047
BstEII
GGTNACC
C
37ºC
200U
1900
3048
BstEII
GGTNACC
C
37ºC
1000U
4300
3049
BgII
GCCNNNNNGGC
C
37ºC
500U
2300
3050
BgII
GCCNNNNNGGC
C
37ºC
1000U
4000
3051
BgIII
AGATCT
C
37ºC
250U
1600
3052
BgIII
AGATCT
C
37ºC
500U
2500
3053
ClaI
ATCGAT
E
37ºC
200U
2400
3054
DraI
TTTAAA
E
37ºC
500U
1950
3055
DraI
TTTAAA
E
37ºC
1500U
3000
3056
EcoRV
GATATC
D
37ºC
500U
1400
3057
EcoRV
GATATC
D
37ºC
1000U
2000
3058
EcoRI
GAATTC
EcoRI
37ºC
4000U
1600
3059
EcoRI
GAATTC
EcoRI
37ºC
12000U
3200
3060
HaeIII
GGCC
D
37ºC
800U
1800
3061
HaeIII
GGCC
D
37ºC
3X800U
3400
3062
HhaI
GCGC
E
37ºC
400U
2200
3063
HincII
AAGCTT
E
37ºC
100U
1950
3064
HindIII
GANTC
D
37ºC
4000U
1800
3065
HindIII
GANTC
D
37ºC
2000U
4200
3066
HinfI
CCGG
D
37ºC
500U
1400
3067
HinfI
CCGG
D
37ºC
1500U
3200
3068
HpaII
GATC
E
37ºC
200U
1800
3069
HpaII
GCCGGC
E
37ºC
800U
4300
3070
KpnI
GGTACC
KpnI
37ºC
800U
1800
3071
MboI
GATC
D
37ºC
80U
2500
3072
MluI
ACGCGT
D
37ºC
400U
1900
3073
MspI
CCGG
E
37ºC
400U
1800
3074
NaeI
GCCGGC
E
37ºC
100U
1950
3075
NcoI
CCATGG
E
37ºC
100U
2300
3076
NheI
GCTAGC
E
37ºC
100U
1950
3077
NotI
GCGGCCGC
C
37ºC
100U
2300
3078
PstI
CTGCAG
C
37ºC
1000U
1950
3079
SacI
GAGCTC
SacI
37ºC
400U
2400
3080
SaII
GTCGAC
C
37ºC
500U
2200
3081
SmaI
CCCGGG
E
30ºC
300U
2400
3082
SspI
AATATT
B
37ºC
100U
2200
3083
TaqI
TCGA
TaqI
65ºC
800U
1950
3084
XbaI
TCTAGA
E
37ºC
1000U
1950
3085
XhoI
CTCGAG
D
37ºC
1000U
1950
3086
XmnI
GAANNNNTTC
E
37ºC
100U
1950

 

Reaction Buffer Sets activity and Conditions for Restriction Endonucleases

 

HELINI buffer

Cat. No

Quantity

Price(Rs.)

Buffer A 3191 1ml of 10X Buffer
400
Buffer B 3192 1ml of 10X Buffer
400
Buffer C 3193 1ml of 10X Buffer
400
Buffer D 3194 1ml of 10X Buffer
400
Buffer E 3195 1ml of 10X Buffer
400
Buffer BamHI 3196 1ml of 10X Buffer
400
Buffer EcoRI 3197 1ml of 10X Buffer
400
Buffer KpnI 3198 1ml of 10X Buffer
400
Buffer TaqI 3199 1ml of 10X Buffer
400
Buffer SacI 3200 1ml of 10X Buffer
400
Dilution Buffer 3201 1ml
400
Buffer set (A,B,C,D and E) 3087 each 1ml of 10X Buffer
1900